Investigations of the Low Frequency Modes of Ferric Cytochrome c Using Vibrational Coherence Spectroscopy
نویسندگان
چکیده
Femtosecond vibrational coherence spectroscopy is used to investigate the low frequency vibrational dynamics of the electron transfer heme protein, cytochrome c (cyt c). The vibrational coherence spectra of ferric cyt c have been measured as a function of excitation wavelength within the Soret band. Vibrational coherence spectra obtained with excitation between 412 and 421 nm display a strong mode at ~44 cm(-1) that has been assigned to have a significant contribution from heme ruffling motion in the electronic ground state. This assignment is based partially on the presence of a large heme ruffling distortion in the normal coordinate structural decomposition (NSD) analysis of the X-ray crystal structures. When the excitation wavelength is moved into the ~421-435 nm region, the transient absorption increases along with the relative intensity of two modes near ~55 and 30 cm(-1). The intensity of the mode near 44 cm(-1) appears to minimize in this region and then recover (but with an opposite phase compared to the blue excitation) when the laser is tuned to 443 nm. These observations are consistent with the superposition of both ground and excited state coherence in the 421-435 nm region due to the excitation of a weak porphyrin-to-iron charge transfer (CT) state, which has a lifetime long enough to observe vibrational coherence. The mode near 55 cm(-1) is suggested to arise from ruffling in a transient CT state that has a less ruffled heme due to its iron d(6) configuration.
منابع مشابه
Spectroscopy, Structural, and Optical Investigations of NiFe2O4 Ferrite
Ni ferrite crystalline material is synthesized using a sol-gel method at two different temperatures. The vibrational and stretching modes, crystalline phase, size distribution and morphology of the products are investigated via Raman back-scattering and Fourier transform infrared (FTIR) spectroscopy, XRD and FESEM, respectively. Vibrational modes of spinel ferrite are observed at Raman and FTIR...
متن کاملPicosecond Dynamics of CN‒-Ligated Ferric Cytochrome c after Photoexcitation Using Time-resolved Vibrational Spectroscopy
The dynamics of the CN‒-ligated ferric cytochrome c (CytcCN) in D2O at 283 K following Q-band photoexcitation at 575 nm was observed using femtosecond time-resolved vibrational spectroscopy. The equilibrium vibrational spectrum of the CN stretching mode of CytcCN shows two overlapping bands: one main band (82%) at 2122 cm‒1 with 23 cm‒1 full width at half maximum (fwhm) and the other band (18%)...
متن کاملExcited-state vibrational coherence of solution-phase molecules observed in the third-order optical process using extremely short pulses
Excited-state vibrational coherence of solution-phase polyatomic molecules was studied by two different timedomain spectroscopic methods. Raman-active low-frequency vibrations in the excited state of trans-stilbene were observed by transient impulsive stimulated Raman scattering spectroscopy. In transient absorption spectroscopy with a 40-fs resolution, a different vibrational mode of the same ...
متن کاملInvestigations of heme distortion, low-frequency vibrational excitations, and electron transfer in cytochrome c.
Cytochrome (cyt) c is an important electron transfer protein. The ruffling deformation of its heme cofactor has been suggested to relate to its electron transfer rate. However, there is no direct experimental evidence demonstrating this correlation. In this work, we studied Pseudomonas aeruginosa cytochrome c551 and its F7A mutant. These two proteins, although similar in their X-ray crystal str...
متن کاملHeme-protein vibrational couplings in cytochrome c provide a dynamic link that connects the heme-iron and the protein surface.
The active site of cytochrome c (Cyt c) consists of a heme covalently linked to a pentapeptide segment (Cys-X-X-Cys-His), which provides a link between the heme and the protein surface, where the redox partners of Cyt c bind. To elucidate the vibrational properties of heme c, nuclear resonance vibrational spectroscopy (NRVS) measurements were performed on (57)Fe-labeled ferric Hydrogenobacter t...
متن کامل